Journalartikel
Autorenliste: Belser, Caroline; Poulain, Julie; Labadie, Karine; Gavory, Frederick; Alberti, Adriana; Guy, Julie; Carradec, Quentin; Cruaud, Corinne; Da Silva, Corinne; Engelen, Stefan; Mielle, Paul; Perdereau, Aude; Samson, Gaelle R.; Gas, Shahinaz E.; Voolstra, Christian R.; Galand, Pierre E.; Flores, J. Michel; Hume, Benjamin C. C.; Perna, Gabriela; Ziegler, Maren; Ruscheweyh, Hans-Joachim; Boissin, Emilie; Romac, Sarah; Bourdin, Guillaume A.; Iwankow, Guillaume; Moulin, Clementine; Garcia, David A. Paz; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Forcioli, Didier; Furla, Paola; Gilson, Eric; Lombard, Fabien; Pesant, Stephane P.; Reynaud, Stephanie; Sunagawa, Shinichi; Thomas, Olivier; Trouble, Romain; Thurber, Rebecca Vega; Zoccola, Didier H.; Scarpelli, Claude; Jacoby, E' Krame; Oliveira, Pedro; Aury, Jean-Marc; Allemand, Denis; Planes, Serge; Wincker, Patrick
Jahr der Veröffentlichung: 2023
Zeitschrift: Scientific Data
Bandnummer: 10
Heftnummer: 1
eISSN: 2052-4463
Open Access Status: Gold
DOI Link: https://doi.org/10.1038/s41597-023-02204-0
Verlag: Nature Research
Abstract:
Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.
Zitierstile
Harvard-Zitierstil: Belser, C., Poulain, J., Labadie, K., Gavory, F., Alberti, A., Guy, J., et al. (2023) Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition, Scientific Data, 10(1), Article 326. https://doi.org/10.1038/s41597-023-02204-0
APA-Zitierstil: Belser, C., Poulain, J., Labadie, K., Gavory, F., Alberti, A., Guy, J., Carradec, Q., Cruaud, C., Da Silva, C., Engelen, S., Mielle, P., Perdereau, A., Samson, G., Gas, S., Voolstra, C., Galand, P., Flores, J., Hume, B., Perna, G., ...Wincker, P. (2023). Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. Scientific Data. 10(1), Article 326. https://doi.org/10.1038/s41597-023-02204-0
