Journalartikel

Jahr der Veröffentlichung: 2017

Seiten: 545-546

Zeitschrift: Bioinformatics

Bandnummer: 33

Heftnummer: 4

ISSN: 1367-4803

Open Access Status: Bronze

DOI Link: https://doi.org/10.1093/bioinformatics/btw648

Verlag: Oxford University Press

Abstract: 
Genome structure rearrangements are a common phenomenon in allopolyploid species. Deletions, duplications and homeologous non-reciprocal translocations (HNRT) between the highly similar subgenomes can be observed, which are known to have a large impact on phenotypic traits. Current research is limited because these rearrangements can be located genome wide only by cost intensive sequencing approaches and not reliably in high-density array genotyping data. We developed gsrc, an R-package to detect genome structure rearrangements from genotyping data in allopolyploid species including exchanges between subgenomes. We exemplarily apply gsrc to a publicly available Brassica napus dataset.\nThe compiled R-package and source code are available at http://cran.r-project.org/web/packages/gsrc/ .\nbirgit.samans@uni-giessen.de.\nSupplementary data are available at Bioinformatics online.\nSummary\nAvailability and Implementation\nContact\nSupplementary information

Harvard-Zitierstil: Grandke, F., Snowdon, R. and Samans, B. (2017) gsrc: an R package for genome structure rearrangement calling., Bioinformatics, 33(4), pp. 545-546. https://doi.org/10.1093/bioinformatics/btw648

APA-Zitierstil: Grandke, F., Snowdon, R., & Samans, B. (2017). gsrc: an R package for genome structure rearrangement calling.. Bioinformatics. 33(4), 545-546. https://doi.org/10.1093/bioinformatics/btw648